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Analysis of KCNQ1 Gene Rearrangement by Southern Blot Technology (CAT#: STEM-MHT-0050-LGZ)

Introduction

Official Full Name: potassium voltage-gated channel subfamily Q member 1<br />Also known as: LQT; RWS; WRS; LQT1; SQT2; ATFB1; ATFB3; JLNS1; KCNA8; KCNA9; Kv1.9; Kv7.1; KVLQT1<br />This gene encodes a voltage-gated potassium channel that is required for the repolarization phase of the cardiac action potential. This protein can form heteromers with two other potassium channel proteins, KCNE1 and KCNE3. Mutations in this gene are associated with hereditary long QT syndrome 1 (also known as Romano-Ward syndrome), Jervell and Lange-Nielsen syndrome, and familial atrial fibrillation. The gene exhibits tissue-specific imprinting, with preferential expression of the maternal allele in some tissues and preferential expression of the biallelic gene in others. The gene is located in a region of chromosome 11, along with other imprinted genes associated with Beckwith-Wiedemann syndrome (BWS), which itself has been shown to be disrupted by chromosomal rearrangements in BWS patients. Alternative splicing transcript variants of this gene have been identified.




Principle

Under certain conditions, two single strands of nucleic acid with certain homology can be specifically hybridized to form double strands according to the principle of base complementarity. Generally, DNA molecules to be detected are digested with restriction enzymes, separated by agar-gel electrophoresis, denatured and transferred to nitrocellulocellulose film or nylon film or other solid phase support according to their position in the gel, fixed and then reacted with DNA probes labeled with isotopes or other markers. This is followed by autoradiography or an enzyme reaction to detect the amount of specific DNA molecules. If the object to be tested contains a sequence that is complementary to the probe, the two are combined by the principle of base complementarity, and the free probe is washed and detected by self-development or other suitable techniques, thus revealing the fragment to be tested and its relative size.

Applications

Gene Rearrangement Detection

Procedure

1. Sample Processing
2. DNA Extraction and Digestion
3. Gel Electrophoresis
4. Gel Pretreatment
5. Transfer membrane
6. Probe Labeling
7. Prehybridization (blocking)
8. Southern hybridization
9. Membrane washing
10. Autoradiographic Assay
11. Results Analysis

Materials

Sample: DNA, Bacterial Fluid/Tissue/Cell