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Protein-metabolite Interactions Proteomic (CAT#: STEM-MB-0097-WXH)

Introduction

Molecular recognition between proteins and small-molecule metabolites plays a crucial role in regulating protein function and controlling various cellular processes. The activities of metabolic enzymes, transcription factors, transporters, and membrane receptors can all be mediated by protein-metabolite interactions (PMIs), thereby linking cellular metabolism with genetic/epigenetic regulation, environmental sensing, and signaling transduction. In addition to directly binding to the active or orthosteric sites of native cognate proteins, metabolites are also known to interact with different allosteric sites, allowing additional specific modulation of protein and macromolecular protein assembly structure and function. Metabolic protein interaction studies (PMIs), a method for assessing proteome binding with associated metabolites, can reveal novel allosteric and enzymatic functions, and can provide an excellent study for studying drug targets in the native cellular context tool.




Applications

• Research on interacting proteins of small molecule metabolites;
• Drug target prediction;
• Research on the mechanism of action of small molecule metabolites: study the effects of small molecule metabolites on biochemical processes, signaling pathways, etc.;
• PMI network diagram construction: Combined with other functional omics data such as PPI network, PTM protein post-translational modification or metabolic flow, it brings a new direction for the crosstalk between different cell regulatory layers.

Procedure

1. Protein extraction from biological samples
2. Metabolites, protein interactions
3. LIP (limited proteolysis) reaction
4. Trypsin enzymatic hydrolysis
5. Mass spectrometry detection
6. Search database for qualitative and quantitative peptides
7. Differential peptides, protein analysis
8. Biological information analysis

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