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Asymmetric PCR (CAT#: STEM-MB-0192-WXH)

Introduction

Asymmetric PCR is a variation of PCR used to preferentially amplify one strand of the original DNA more than the other. The technique has applications in some types of sequencing and hybridization probing where having only one of the two complementary strands is required. Asymmetric PCR differs from regular PCR by the excessive amount of primers for a chosen strand. Due to the slow (arithmetic) amplification later in the reaction (after the limiting primer has been used up) extra cycles of PCR are required.<br />Asymmetric PCR is mainly used to prepare ssDNA for sequencing, which has the advantage that the remaining primers do not have to be removed before sequencing because the small amount of restriction primers has been exhausted. Most scholars believe that DNA sequence analysis using cDNA by asymmetric PCR is a good method for studying eukaryotic DNA exons.<br />Linear-after-the-exponential (LATE)-PCR describes a novel approach to asymmetric PCR which uses adjusted melting temperatures of the limited primer to increase PCR efficiency.




Principle

The basic principle of asymmetric PCR is to use an unequal pair of primers, and after several cycles, the low concentration of primers is consumed, and subsequent cycles produce only the extension products of the high concentration of primers, resulting in a large amount of single-stranded DNA (ssDNA).

Applications

• DNA sequencing and hybridization studies.
• Site-directed mutagenesis studies.
• Discrimination and identifying various alleles.

Procedure

1.pre-denaturing the target nucleic acid sequence;
2.asymmetrically amplifying the target nucleic acid sequence by a PCR amplification reaction comprising
i) a first phase of PCR amplification comprising one or more cycles of denaturation, primer annealing, and primer extension;
ii) a second phase of PCR amplification comprising one or more cycles of denaturation, primer annealing, and primer extension.