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Analysis of Secondary Order Structure by Circular Dichroism (CD) (CAT#: STEM-B-0374-CJ)

Introduction

Structure and conformation of a biological molecule is key for its function. The higher order structure of a biopharmaceutical molecule is, thereby, often directly connected to the quality, stability, safety, and efficacy of a therapy. The higher order structure is considered a critical quality attribute and, thus, a detailed understanding of the higher order structure of a biopharmaceutical compound is critical in every research and development phase. Characterizing the secondary, tertiary and, if present, quaternary structure of a biopharmaceutical compound requires multiple analytical techniques.<br /><br />The secondary structure of a protein refers to the local folding patterns on the polypeptide chain formed by intramolecular interactions between atoms of the backbone. The formation of the secondary structure is mainly driven by hydrogen bonding between amino groups and carboxyl groups on the polypeptide chain.<br /><br />The most common types of secondary structure are α helix and β sheet. An α helix is made when the polypeptide chain turns around itself, forming a structural motif that resembles a spiral staircase. A β sheet is generated when multiple segments of a polypeptide chain lie side by side, creating a sheet-like structure held together by hydrogen bonds. Most proteins contain α helices and β sheets. For example, α helices are especially abundant in membrane proteins and hair cells (i.e., α-keratin), and β sheets are the main component of amyloid fibers in both animals and bacteria.




Principle

The signal obtained from CD measurements (ellipticity) arises from differences in absorption by chiral molecules of left- and right-handed circularly polarized light.

For proteins, Far-UV CD measurements are obtained using circularly polarized light over a wavelength range of about ≤ 200-250 nm. Light absorption in this wavelength range is mainly due to absorption by the peptide bonds. Since each type of secondary structure element (such as α-helix, β-sheet, etc.) has a distinctive spectral CD profile, Far-UV CD is sensitive to changes in the secondary structure. For instance, Far-UV CD measurements can be performed in different solution conditions (pH, excipients, etc.) to determine the effects thereof on the secondary structural content of a given protein. Also, secondary structures can be estimated when compared to library/database information.

Near-UV CD measurements are obtained over a wavelength range of about 250-300 nm, where tyrosine, tryptophan and phenylalanine residues, as well as disulfide bridges absorb light and are CD sensitive. Near-UV CD signals largely depend on the relative orientation as well as the local mobility of these residues. Consequently, Near-UV CD measurements can provide information about changes in the tertiary structure of proteins, e.g., because of formulation conditions, elevated temperature, storage.

Applications

Biopharmaceutica

Procedure

1. Sample preparation.
2. Perform Circular dichroism (CD)
3. Analyse the data: the far-UV (ultraviolet) CD spectrum of proteins can reveal important characteristics of their secondary structure.The near-UV CD spectrum (>250 nm) of proteins provides information on the tertiary structure.

Materials

• Sample: Proteins
• Equipment: Circular dichroism (CD)

Notes

Circular dichroism (CD) measurements are most commonly used to determine changes in the secondary and tertiary structure of proteins but can be applied to other bio-molecules as well.