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Analysis Affinity of Fluorescent Aptamers for Thrombin Target by KinExA (CAT#: STEM-MB-0006-CJ)

Introduction

Aptamers are short nucleotide oligomers selected and isolated by the Systematic Evolution of Ligands by Exponential Enrichment (SELEX) technique to present high specificity and affinity for a large variety of targets ranging from ions and small molecules to whole cells. Their ability to selectively recognize and bind targets recommends them as promising alternatives to antibodies for scientific and medical purposes. Aptamers have been investigated as potential analytical and diagnostic tools with approaches and technologies that traditionally employ antibodies as recognition elements. Compared to antibodies, DNA aptamers are cost effective, present similar specificity and affinity for targets, have greater stability either lyophilized or in solution at room temperature, and are readily amenable to chemical modifications.




Principle

KinExA is a two-stage analysis system+E45. In the first stage, a number of solutions are prepared, where one partner remains constant (constant binding partner, or CBP) and the other (titrant) is variable, usually serially diluted. As the titrant is added, the free CBP decreases and is analysed by a sophisticated and precise microfluorescence measurement device. The signal generated can be mathematically related to the affinity (KD) of the two molecules for each other, as well as the kinetic parameters of binding (kon) and dissociation (koff).

Applications

Oncology & Cancer, Metabolic; Immunology/Inflammation, Toxicology

Procedure

1. preparation of the functionalized beads which will capture the analyte for measuremen.
2. preparation of a series of solutions consisting of a constant initial concentration of one component of the binary reaction and serial dilutions of the other reactant. The component that is kept constant is the constant binding partner (CBP) , and is the one which will be analyzed.
3. each reaction mixture is sampled and the fluorescence of free CBP bound to the capture beads is obtained for subsequent numerical analysis.

Materials

• Sample Type: Antibodies, Cells, Small Molecules, Proteins, DNA, Lipids, Viruses, Serum, & More
• Equipment: Kinetic Exclusion Assay (KinExA)