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Analysis Biomolecular Interactions of PirC and PII by BLI (CAT#: STEM-MB-0220-CJ)

Introduction

Nitrogen limitation causes a major shift in the lifestyle of non-diazotrophic cyanobacteria, which is controlled by a complex interplay of regulatory factors involving the universal signal processor PII. Once nitrogen limitation is achieved, the newly fixed carbon is immediately redirected towards glycogen synthesis.<br /><br />Using the non-diazotrophic cyanobacterium Synechocystis sp. PCC 6803 as a model system, a new PII interactor, PirC, the product of the sll0944 gene, was identified. pirC binds to and inhibits the activity of 2,3-phosphoglycerate independent phosphoglycerate mutase (PGAM), an enzyme that deflects newly fixed CO2 towards low glycolysis. The binding of PirC to PII or PGAM is regulated by the metabolite 2-oxoglutarate (2-OG), which accumulates during nitrogen starvation. Mutants lacking pirc have significantly reduced glycogen levels and excessive accumulation of polyhydroxybutyrate particles during nitrogen deprivation. It was shown that pirC can control carbon fluxes in cyanobacteria through mutually exclusive interactions with PII or PGAM.




Principle

Bio-Layer Interferometry (BLI) is an optical technique for measuring macromolecular interactions by analyzing interference patterns of white light reflected from the surface of a biosensor tip. BLI experiments are used to determine the kinetics and affinity of molecular interactions. In a BLI experiment, one molecule is immobilized to a Dip and Read Biosensor and binding to a second molecule is measured. A change in the number of molecules bound to the end of the biosensor tip causes a shift in the interference pattern that is measured in real-time.

Applications

Biochemistry

Procedure

1. Detect Buffers and prepare samples. BLI experiments are set up with one molecule immobilised on the surface of the biosensor (load sample) and a second molecule in solution (the analytical sample).
2. Fix the load sample on the biocompatible biosensor while the analytical sample is in solution.
3. The biosensor tip is immersed in the solution so that the target molecule begins to bind to the analysis sample.
4. Set up and run the BLI experiment. Molecules bound to or dissociated from the biosensor can generate response curves on the BLI system; unbound molecules, changes in the refractive index of the surrounding medium or changes in flow rate do not affect the interferogram pattern.
5. Collect and analyse data on the BLI's system.

Materials

• Equipment: Fortebio Bio-Layer Interferometry (BLI)
• Sample Type: DNA, RNA, Protein, Antibodies, Peptides, Small Molecules
• Optionals: Ni-NTA HisTrap columns, Magnetic Agarose beads, 12% Bis-Tris Gels